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Module documentation

• axoden
  • load_table()
  • plot_signal_intensity_along_axis()
  • process_folder()
  • process_image()
  • save_table()
  • write_signal_intensity_along_axis_plot()
  • write_summary_data_plot()
• axoden.volume_projections
  • binarize_image()
  • collect_image_mask()
  • collect_info_from_filename()
  • compute_area()
  • control_plot_steps()
  • count_pixels()
  • generate_background_mask()
  • get_tif_files()
  • intensity_along_axis()
  • load_table()
  • make_figures_pdf_editable()
  • open_tif_image()
  • plot_signal_intensity_along_axis()
  • process_folder()
  • process_image()
  • remove_spines_plot()
  • remove_ticks_plot()
  • save_table()
  • write_signal_intensity_along_axis_plot()
  • write_summary_data_plot()
• GUI
• Streamlit pdf utility functions
  • fig2pdfpage()
  • fig2stream()
  • join_pdfs()
  • pages2pdf()
  • pdf2stream()
• Streamlit app utility functions
  • cached_plot_signal_intensity_along_axis()
  • cached_plot_summary_data()
  • get_brain_regions()
  • get_figure_by_brain_region()
  • hash_uploaded_file()
  • process_image_single_cached()
  • process_images()