Index

A

axoden module axoden.gui module axoden.gui.streamlit_app.app_utils module

axoden.gui.streamlit_app.pdf_utils module axoden.volume_projections module

B

binarize_image() (in module axoden.volume_projections)

C

cached_plot_signal_intensity_along_axis() (in module axoden.gui.streamlit_app.app_utils) cached_plot_summary_data() (in module axoden.gui.streamlit_app.app_utils) collect_image_mask() (in module axoden.volume_projections)

collect_info_from_filename() (in module axoden.volume_projections) compute_area() (in module axoden.volume_projections) control_plot_steps() (in module axoden.volume_projections) count_pixels() (in module axoden.volume_projections)

F

fig2pdfpage() (in module axoden.gui.streamlit_app.pdf_utils)

fig2stream() (in module axoden.gui.streamlit_app.pdf_utils)

G

generate_background_mask() (in module axoden.volume_projections) get_brain_regions() (in module axoden.gui.streamlit_app.app_utils)

get_figure_by_brain_region() (in module axoden.gui.streamlit_app.app_utils) get_tif_files() (in module axoden.volume_projections)

H

hash_uploaded_file() (in module axoden.gui.streamlit_app.app_utils)

I

intensity_along_axis() (in module axoden.volume_projections)

J

join_pdfs() (in module axoden.gui.streamlit_app.pdf_utils)

L

load_table() (in module axoden) (in module axoden.volume_projections)

M

make_figures_pdf_editable() (in module axoden.volume_projections) module axoden axoden.gui axoden.gui.streamlit_app.app_utils axoden.gui.streamlit_app.pdf_utils axoden.volume_projections

O

open_tif_image() (in module axoden.volume_projections)

P

pages2pdf() (in module axoden.gui.streamlit_app.pdf_utils) pdf2stream() (in module axoden.gui.streamlit_app.pdf_utils) plot_signal_intensity_along_axis() (in module axoden) (in module axoden.volume_projections) process_folder() (in module axoden) (in module axoden.volume_projections)

process_image() (in module axoden) (in module axoden.volume_projections) process_image_single_cached() (in module axoden.gui.streamlit_app.app_utils) process_images() (in module axoden.gui.streamlit_app.app_utils)

R

remove_spines_plot() (in module axoden.volume_projections)

remove_ticks_plot() (in module axoden.volume_projections)

S

save_table() (in module axoden) (in module axoden.volume_projections)

W

write_signal_intensity_along_axis_plot() (in module axoden) (in module axoden.volume_projections)

write_summary_data_plot() (in module axoden) (in module axoden.volume_projections)